CDS

Accession Number TCMCG051C27383
gbkey CDS
Protein Id XP_024464640.1
Location complement(join(2587068..2587207,2587368..2588276,2588373..2588580,2588736..2588816,2588916..2589020,2589840..2590007,2590701..2590808,2591024..2591097,2591413..2591488,2591560..2591647,2592606..2592674,2593983..2594113,2594900..2595062,2595268..2595340,2595791..2595833,2596165..2596245,2597389..2597412))
Gene LOC7491127
GeneID 7491127
Organism Populus trichocarpa

Protein

Length 846aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_024608872.1
Definition E3 SUMO-protein ligase SIZ1 isoform X3 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category K
Description E3 SUMO-protein ligase
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko04121        [VIEW IN KEGG]
ko04812        [VIEW IN KEGG]
KEGG_ko ko:K04706        [VIEW IN KEGG]
ko:K16063        [VIEW IN KEGG]
ko:K22403        [VIEW IN KEGG]
EC -
KEGG_Pathway ko04120        [VIEW IN KEGG]
ko04630        [VIEW IN KEGG]
ko05160        [VIEW IN KEGG]
map04120        [VIEW IN KEGG]
map04630        [VIEW IN KEGG]
map05160        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000902        [VIEW IN EMBL-EBI]
GO:0001101        [VIEW IN EMBL-EBI]
GO:0002682        [VIEW IN EMBL-EBI]
GO:0002683        [VIEW IN EMBL-EBI]
GO:0002831        [VIEW IN EMBL-EBI]
GO:0002832        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006935        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0007154        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009266        [VIEW IN EMBL-EBI]
GO:0009267        [VIEW IN EMBL-EBI]
GO:0009408        [VIEW IN EMBL-EBI]
GO:0009409        [VIEW IN EMBL-EBI]
GO:0009414        [VIEW IN EMBL-EBI]
GO:0009415        [VIEW IN EMBL-EBI]
GO:0009553        [VIEW IN EMBL-EBI]
GO:0009593        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009653        [VIEW IN EMBL-EBI]
GO:0009787        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009826        [VIEW IN EMBL-EBI]
GO:0009856        [VIEW IN EMBL-EBI]
GO:0009908        [VIEW IN EMBL-EBI]
GO:0009909        [VIEW IN EMBL-EBI]
GO:0009910        [VIEW IN EMBL-EBI]
GO:0009966        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0009991        [VIEW IN EMBL-EBI]
GO:0010035        [VIEW IN EMBL-EBI]
GO:0010112        [VIEW IN EMBL-EBI]
GO:0010113        [VIEW IN EMBL-EBI]
GO:0010183        [VIEW IN EMBL-EBI]
GO:0010247        [VIEW IN EMBL-EBI]
GO:0010286        [VIEW IN EMBL-EBI]
GO:0010337        [VIEW IN EMBL-EBI]
GO:0010565        [VIEW IN EMBL-EBI]
GO:0010646        [VIEW IN EMBL-EBI]
GO:0010817        [VIEW IN EMBL-EBI]
GO:0016036        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016049        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016925        [VIEW IN EMBL-EBI]
GO:0018193        [VIEW IN EMBL-EBI]
GO:0018205        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019787        [VIEW IN EMBL-EBI]
GO:0019789        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0023051        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031347        [VIEW IN EMBL-EBI]
GO:0031348        [VIEW IN EMBL-EBI]
GO:0031667        [VIEW IN EMBL-EBI]
GO:0031668        [VIEW IN EMBL-EBI]
GO:0031669        [VIEW IN EMBL-EBI]
GO:0032101        [VIEW IN EMBL-EBI]
GO:0032102        [VIEW IN EMBL-EBI]
GO:0032350        [VIEW IN EMBL-EBI]
GO:0032446        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032989        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0035670        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0040007        [VIEW IN EMBL-EBI]
GO:0040008        [VIEW IN EMBL-EBI]
GO:0040011        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042330        [VIEW IN EMBL-EBI]
GO:0042594        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043900        [VIEW IN EMBL-EBI]
GO:0043901        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044706        [VIEW IN EMBL-EBI]
GO:0045088        [VIEW IN EMBL-EBI]
GO:0045824        [VIEW IN EMBL-EBI]
GO:0048229        [VIEW IN EMBL-EBI]
GO:0048367        [VIEW IN EMBL-EBI]
GO:0048437        [VIEW IN EMBL-EBI]
GO:0048438        [VIEW IN EMBL-EBI]
GO:0048440        [VIEW IN EMBL-EBI]
GO:0048467        [VIEW IN EMBL-EBI]
GO:0048481        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048580        [VIEW IN EMBL-EBI]
GO:0048581        [VIEW IN EMBL-EBI]
GO:0048583        [VIEW IN EMBL-EBI]
GO:0048585        [VIEW IN EMBL-EBI]
GO:0048589        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048827        [VIEW IN EMBL-EBI]
GO:0048831        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0048868        [VIEW IN EMBL-EBI]
GO:0048869        [VIEW IN EMBL-EBI]
GO:0050776        [VIEW IN EMBL-EBI]
GO:0050777        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050826        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0050918        [VIEW IN EMBL-EBI]
GO:0051093        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051239        [VIEW IN EMBL-EBI]
GO:0051241        [VIEW IN EMBL-EBI]
GO:0051301        [VIEW IN EMBL-EBI]
GO:0051606        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060560        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0061659        [VIEW IN EMBL-EBI]
GO:0061665        [VIEW IN EMBL-EBI]
GO:0062012        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0070647        [VIEW IN EMBL-EBI]
GO:0071496        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080134        [VIEW IN EMBL-EBI]
GO:0090352        [VIEW IN EMBL-EBI]
GO:0090567        [VIEW IN EMBL-EBI]
GO:0099402        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1901419        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1903314        [VIEW IN EMBL-EBI]
GO:1905957        [VIEW IN EMBL-EBI]
GO:2000026        [VIEW IN EMBL-EBI]
GO:2000070        [VIEW IN EMBL-EBI]
GO:2000241        [VIEW IN EMBL-EBI]
GO:2000242        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGATTTAGTAGCTAGTTGCAAGGACAAATTGGTGTATTTTCGAATAAAAGAGCTGAAGGATGTCCTGACTCAGTTAGGTCTTTCAAAGCAGGGGAAGAAGCAGGACCTTGTTGACCGGATATTAGCTATTCTGTCTGATGAACAAGTTTCCAAGATATGGGCAAAGAAGAGTGCCATTGGAAAGGAAGAGGCGGCAAAACTAGTGGATGACACTTACAGGAAAATGCAAGTGTCCGGGGCCACTGATTTAGCATCAAAGGGACAGGGCGTGTCTAATTGCAGTAATTCCAAATTTAGTGGAGAAATGGATGAACCATTTCACTCTGATACAAAAGTTCGCTGTCCATGTGGAACCTCATTGGAGACAGAGTCGATGATTAAGTGTGAGGATTTTAAATGTCATGTGTGGCAACACATTGGTTGCGTTATAATTCCAGAAAAAGCCATGGAGGGCACTCCACAATTTCCGGATGTGTTCTATTGTGAGACTTGTCGACTAAGCAGGGCTGACCCCTTTTGGGTTACAGTTGCACAACCTCTATATCCTGTGAAGCTGGTTGCTACAAATGTTCCAACTGATGGTTCAAGCCCAGCGCAGGGTGTGGAGAAAACATTTCATCTCACTAGAGCAGACAAGGATCTACTGGCAAAACAAGAATATGATATTCAGGCCTGGTGCATGCTTTTGAATGACAAAGTTCCATTTAGGATGCAATGGCCGCAGTATGCAGATCTCCAGGTTAATGGTATTGCTGTTCGTGCTATTAATAGACCTGGCTCGCAATTGCTAGGCGCTAATGGTCGTGATGATGGTCCAATTATCACGTCATGTGCAAAAGATGGAATCAATAAGATATCATTAACCGGATGTGATGCTCGAATCTTCTGCTTAGGAGTTAGAATTGTAAAGCGGCGAACAGTTCAGCAGATATTCAACTTGATTCCCAAGGAGTCTGAAGGTGAGCGTTTTGAAGATGCACTTGCTCGTGTTTGTCGCTGCGTTGGTGGTGGAACTGCAACAGATGATGCCTATAGTGACAGTGACAGTGACCTGGAAGTTGTTGCAGATTCTTTTGGTGTCAATCTTCGTTGTCCTATGAGCGGTTCAAGAATGAAGATTGCAGGAAGATTCAAATCTTGTGCGCACATGGGCTGTTTTGACCTGGAAGTTTTTGTGGAGCTGAACCAGCGTTCTAGGAAGTGGCAGTGCCCCATCTGTCTCAAGAACTACTCCTTGGAAAATATAATCATTGACCCATATTTCAATCGCATCACATCTAAGATGAGGCATTGCGTGGAAGATATAACAGAGATTGAGGTGAAGCCTGATGGTTCCTGGCGAGTGAAAACAAAAACTGAATCTGACCATAGGGATGCTGGAGAACTTGCTCAATGGCATAATCCTGATAGCACTCTCTGTGTCCCTTACACTGGAGAACTCAAATCAAAAGTGGAAATGAAGCAGATCAAGCAGGAAGGTGGTTCAGAAGGTAGATTGCAAGAAAACTTTGAACTCTATGAACAGAAAGTTATTCCTATGAGCAGCAGTGCTACTGGTAGTGGTCGTGATGGGGAAGATCCAAGTGTAAATCAAGATACTGGTGAAAATTTTGAATTCACAAACAATGGAATGGAGCTTGATTCTTTATCGTTGAATGTATATTCAACGTACGGATTCACTGACCAAAATTTATCTGCACCAGTAGGGAATGCAGAAGTCATTGTTCTTAGTGATTCAGATGAAGAAAATGATATATTAATGTCCTCTGGATCTGTCTACAAGAGCAATCAAAATGGTGGTGCTACTATTTCTGTGCCCTCTCCTGAAATTGCAGATCATTTTCTGGAAGATCCTACACTTGGGACTGGTGGAAATTCTTGCTTGGGTCTTTTCAATGCTGATGAATATGGGATGCCCCTCTGGCCACTACCTCCCGGAAACCAAGCTGGTCCGGGATTCCAATTATTTAATTCAGATGTCTCAGATGCCTTGGTTGATTTACCGCATGATCCTGTTAACTGTCCCTCTTCAATGAATGGCTACACATTAGCTCCAGAAACTGTCATGAGATCTACTTGTTTAATTCCAGATTCTTCTATTGGTCGATCAGACACGGATGTAAATGATGGTTTGGTTGATAATCCCTTGGCTTTTGGCAGAGAAGATCCCAGTCTTCAAATCTTTCTTCCAACTGGGCCTTCAGATGCATCAATGCAGTCTGATATGAGGGATCAAGCTGATGTGTCAAATGGTGTCCGTACTGATGATTGGATCTCTCTTAGGCTTGGTGGTGGTGGTGCTACTGGCAATCACAGCGAGGCAGTTCCTTCAACAAATAGACTGAATTCAAGGCAGCAGATGCCATCTAGAGAAGATGGCATGGATTTGGCTGGCACTGATTCTTTGCATCTTGGTATCAATGATGGCAGATCTGAAAAGGCAAGTCGACAAAGATCAGACAGTCCTTTCTCATTTCCTCGCCAAAAACGTTCTGTAAGACCACGGTTGTATCTTTCTATTGACTCAGACTCTGAGTGA
Protein:  
MDLVASCKDKLVYFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDEQVSKIWAKKSAIGKEEAAKLVDDTYRKMQVSGATDLASKGQGVSNCSNSKFSGEMDEPFHSDTKVRCPCGTSLETESMIKCEDFKCHVWQHIGCVIIPEKAMEGTPQFPDVFYCETCRLSRADPFWVTVAQPLYPVKLVATNVPTDGSSPAQGVEKTFHLTRADKDLLAKQEYDIQAWCMLLNDKVPFRMQWPQYADLQVNGIAVRAINRPGSQLLGANGRDDGPIITSCAKDGINKISLTGCDARIFCLGVRIVKRRTVQQIFNLIPKESEGERFEDALARVCRCVGGGTATDDAYSDSDSDLEVVADSFGVNLRCPMSGSRMKIAGRFKSCAHMGCFDLEVFVELNQRSRKWQCPICLKNYSLENIIIDPYFNRITSKMRHCVEDITEIEVKPDGSWRVKTKTESDHRDAGELAQWHNPDSTLCVPYTGELKSKVEMKQIKQEGGSEGRLQENFELYEQKVIPMSSSATGSGRDGEDPSVNQDTGENFEFTNNGMELDSLSLNVYSTYGFTDQNLSAPVGNAEVIVLSDSDEENDILMSSGSVYKSNQNGGATISVPSPEIADHFLEDPTLGTGGNSCLGLFNADEYGMPLWPLPPGNQAGPGFQLFNSDVSDALVDLPHDPVNCPSSMNGYTLAPETVMRSTCLIPDSSIGRSDTDVNDGLVDNPLAFGREDPSLQIFLPTGPSDASMQSDMRDQADVSNGVRTDDWISLRLGGGGATGNHSEAVPSTNRLNSRQQMPSREDGMDLAGTDSLHLGINDGRSEKASRQRSDSPFSFPRQKRSVRPRLYLSIDSDSE